Present Status of LIGAND Chemical Database for Enzyme Reactions

نویسندگان

  • Takaaki Nishioka
  • Susumu Goto
  • Minoru Kanehisa
چکیده

LIGAND Chemical Database for Enzyme Reactions was originally designed to link structural aspects of enzymatic proteins to chemical aspects of enzymatic reactions . It has accumulated all known enzymes classi ed according to the EC numbers given by the International Union of Biochemistry and Molecular Biology (IUBMB) and has been integrated within the DBGET/LinkDB system with protein structure databases. Enzymatic reaction catalyzed by each enzyme is given by the chemical equation and by the chemical names of the substrates, products, and inhibitors of the reaction. LIGAND has provided a various approach to the analysis of structure-function relationships of enzymes such as the extraction of the amino acid sequence motifs responsible for the substrate speci city of the enzymes (Suyama et al., 1995). The present paper show the present status of the LIGAND.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

LIGAND: chemical database of enzyme reactions

LIGAND is a composite database comprising three sections: ENZYME for the information of enzyme molecules and enzymatic reactions, COMPOUND for the information of metabolites and other chemical compounds, and REACTION for the collection of substrate-product relations. The current release includes 3390 enzymes, 5645 compounds and 5207 reactions. The database is indispensable for the reconstructio...

متن کامل

LIGAND database for enzymes, compounds and reactions

LIGAND is a composite database consisting of three sections and containing the information of chemical substances, chemical reactions and enzymes that catalyze reactions. The COMPOUND section is a collection of metabolic compounds, as well as macromolecules, chemical elements and other chemical substances in a living cell. The ENZYME section is a collection of all known enzymatic reactions, tog...

متن کامل

LIGAND: chemical database for enzyme reactions

MOTIVATION The existing molecular biology databases focus on the sequence and structural aspects of biological macromolecules, i.e. DNAs, RNAs and proteins. However, in order to understand the functional aspects, it is essential to computerize the interaction of these molecules. Furthermore, living cells contain additional molecules, such as metabolic compounds and metal ions, that may also be ...

متن کامل

Deductive Calculation Library for KEGG Pathway Simulation

KEGG, Kyoto Encyclopedia of Genes and Genomes, project consists of three types of data, pathways, hierarchies, and binary relations, that are used to represent biological knowledge. We present here a C++ library for e cient calculation of possible pathways from binary relations. In practice, the library is used to calculate metabolic pathways from the substrate-product relations of enzymes stor...

متن کامل

EzCatDB: the Enzyme Catalytic-mechanism Database

The EzCatDB (Enzyme Catalytic-mechanism Database) specifically includes catalytic mechanisms of enzymes in terms of sequences and tertiary structures of enzymes, and proposed catalytic mechanisms, along with ligand structures. The EzCatDB groups enzyme data in the Protein Data Bank (PDB) and the SWISS-PROT database with identical domain compositions, Enzyme Commission (EC) numbers and catalytic...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 1998